​鳥類バイオサイエンス研究室

【2020】
 

• Kinoshita K, Suzuki T, Koike M, Nishida C, Koike A, Nunome M, Uemura T, Ichiyanagi K, Matsuda Y. Combined Deletions of IHH and NHEJ1 cause chondrodystrophy and embryonic lethality in the Creeper chicken. Communications Biology 3: 144, 2020.
   

• Kikuchi M, Nishimura T, Ishishita S, Matsuda Y, Tanaka M. foxl3, a sexual switch in germ cells, initiates two independent molecular pathways for commitment to oogenesis in medaka. Proceedings of the National Academy of Sciences USA (in press).

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【2019】

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• Okuzaki Y, Kaneoka H, Suzuki T, Hagihara Y, Nakayama Y, Murakami S, Murase Y, Kuroiwa A, Iijima S, Nishijima KI. PRDM14 and BLIMP1 control the development of chicken primordial germ cells. Developmental Biology 455: 32-41, 2019. 

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• Mori S, Sakakura E, Tsunekawa Y, Hagiwara M, Suzuki T, Eiraku M. Self-organized formation of developing appendages from murine pluripotent stem cells. Nature Communications 10: 3802, 2019.

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• Saito S, Kawamura K, Matsuda Y, Suzuki T. Brilliant Blue as an alternative dye to Fast Green for in ovo electroporation. Development, Growth and Differentiation 61: 402-409, 2019.

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• Tsujino K, Okuzaki Y, Hibino N, Kawamura K, Saito S, Ozaki Y, Ishishita S, Kuroiwa A, Iijima S, Matsuda Y, Nishijima K, Suzuki T. Identification of transgene integration site and anatomical properties of fluorescence intensity in a EGFP transgenic chicken line. Development, Growth and Differentiation 61: 393-401, 2019.​

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• Matsubara K, Kumazawa Y, Ota H, Nishida C, Matsuda Y. Karyotype analysis of four blind snake species (Reptilia: Squamata: Scolecophidia) and karyotypic changes in Serpentes. Cytogenetic and Genome Research 154(1-2): 98–106 (invited paper for the special issue “Reptile Cytogenetics in the Sequencing Era”)
   

• Nunome M, Kinoshita K, Ishishita S, Ohmori Y, Murai A, Matsuda Y. Genetic diversity of 21 experimental chicken lines with diverse origins and genetic backgrounds. Experimental Animals 68(2): 177–193, 2019.

 

• Uno Y, Nishida C, Hata A, Ishishita S, Matsuda Y. Molecular cytogenetic characterization of repetitive sequences comprising centromeric heterochromatin in three Anseriformes species. PLOS ONE 14(3): e0214028, 2019.

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【2018】

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• Ishishita S, Takahashi M, Yamaguchi K, Kinoshita K, Nakano M, Nunome M, Kitahara S, Tatsumoto S, Go Y, Shigenobu S, Matsuda Y. Nonsense mutation in PMEL is associated with yellowish plumage colour phenotype in Japanese quail. Scientific Reports 8: 16732, 2018.

 

• 松田洋一：「性の進化史 −いまヒトの染色体で何が起きているのか−」、新潮選書、新潮社、2018年5月刊．

 

• Shibata H, Chijiwa T, Oda-Ueda N, Nakamura H, Yamaguchi K, Hattori S, Matsubara K, Matsuda Y, Kazuki Mori K, Tashiro K, Satoru Kuhara S, Yamasaki S, Fujie M, Goto H, Koyanagi R, Takeuchi T, Fukumaki Y, Ohno M, Shoguchi E, Hisata K, Satoh N, Ogawa T. The habu genome reveals accelerated evolution of venom protein genes. Scientific Reports 8: 113000, 2018.

 

【2017】

 

• Kumamoto S, Takahashi N, Nomura K, Fujiwara M, Kijioka M, Uno Y, Matsuda Y, Sotomaru Y, Kono T. Overexpression of microRNAs from the Gtl2-Rian locus contributes to postnatal death in mice. Human Molecular Genetics 26: 3653–3662, 2017.
   

• Mawaribuchi S, Takahashi S, Wada M, Uno Y, Matsuda Y, Kondo M, Fukui A,Takamatsu N, Taira M, Ito M. Sex chromosome differentiation and the W- and Z-specific loci in Xenopus laevis. Developmental Biology 426: 393–400, 2017.
   

• Suzuki A, Uno Y, Takahashi S, Grimwood J, Schmutz J, Mawaribuchi S, Yoshida H, Takebayashi-Suzuki K, Ito M, Matsuda Y, Rokhsar D, Taira M. Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis. Developmental Biology 426: 236–244, 2017.
   

• Nunome M, Nakano M, Tadano R, Kawahara-Miki R, Kono T, Takahashi S, Kawashima T, Fujiwara A, Nirasawa K, Mizutani M, Matsuda Y. Genetic divergence in domestic Japanese quail inferred from mitochondrial DNA D-loop and microsatellite markers. PLoS ONE 12: e0169978, 2017. 
   

• Ishijima J*, Uno Y*, Nunome M, Nishida C, Kuraku S, Matsuda Y. Molecular cytogenetic characterization of chromosomal region-specific repetitive sequences in the Arctic lamprey (Lethenteron camtschaticum, Petromyzontidae). DNA Research 24: 93–101, 2017. (*co-first author)
   

• 鈴木孝幸、黒岩厚. 後肢発生研究で見えてきた、胴の長さの進化. Nature ダイジェスト Vol. 15 No. 2 | doi : 10.1038/ndigest.2018.180221. 2018
   

• Matsubara Y., Hirasawa T., Egawa S., Hattori A., Suganuma T., Kohara Y., Nagai T., Tamura K., Kuratani S., Kuroiwa A., Suzuki T. Anatomical integration of the sacral-hindlimb unit coordinated by GDF11 underlies variation in hindlimb positioning in tetrapods.Nature Ecology and Evolution. 1, DOI: 10.1038/s41559-017-0247-y. 2017
   

• Suzuki T., Morishita Y. A quantitative approach to understanding vertebrate limb morphogenesis at the macroscopic tissue level.
  Curr Opin Genet Dev., 45, 108-114. doi: 10.1016/j.gde.2017.04.005. 2017
   

• Ueda S., Suzuki T., Tanaka M.Transgene Introduction into the Chick Limb Bud by Electroporation.Methods Mol Biol., 1650:203-208. doi:10.1007/978-1-4939-7216-6_13. 2017
   

• Matsubara H, Saito D, Abe G, Yokoyama H, Suzuki T, Tamura K.Upstream regulation for initiation of restricted Shh expression in the chick limb bud.Dev Dyn., doi: 10.1002/dvdy.24493. 2017
   

【2016】

• Matsubara Y*, Nakano M*, Kawamura K, Tsudzuki M, Funahashi J, Agata K, Matsuda Y, Kuroiwa A, Suzuki T. Inactivation of sonic hedgehog signaling and polydactyly in limbs of Hereditary Multiple Malformation, a novel type of Talpid mutant. Frontiers in Cell and Developmental Biology 4: 149, 2017. (*co-first author)
   

• 宇野好宣、平良眞規 (2016) 異質4倍体であるアフリカツメガエルにおけるゲノムの進化. ライフサイエンス新着論文レビュー (http://first.lifesciencedb.jp/archives/14939)
   

• Session AM*, Uno Y*, Kwon T*, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB,  Simakov O,  Putnam N,  Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari S, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Darwin S, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte E, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJC, Fujiyama A, Harland RM, Taira M, Rokhsar DS. Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538:336–343, 2016, (*co-first author) (News & Views, Nature 538:320-321, 2016) (プレスリリースPDF)
   

• Ishishita S, Matsuda Y. Interspecific hybrids of dwarf hamsters and Phasianidae birds as animal models for studying the genetic and developmental basis of hybrid incompatibility. Genes & Genetic Systems 91: 63–75, 2016 (Invited review paper for special issue).
   

• Matsubara K, Nishida C, Matsuda Y, Kumazawa Y. Sex chromosome evolution in snakes inferred from divergence patterns of two gametologous genes and chromosome distribution of sex chromosome-linked repetitive sequence. Zoological Letters 2: 19, 2016.
   

• Kinoshita K, Shimogiri T, Ibrahim HR, Tsudzuki M, Maeda Y, Matsuda Y. Identification of TENP as the gene encoding chicken egg white ovoglobulin G2 and demonstration of its high genetic variability in chickens. PLoS ONE 11: e0159571, 2016.
   

• Kinoshita K , Myint SL, Shimogiri T, Ibrahim HR, Kawabe K, Okamoto S, Lee Y, Matsuda Y, Maeda Y. Chicken ovotransferrin variants OTFB and OTFC harboring substitution of GAT (Asp) to AAT (Asn) in the codon 500 and their antimicrobial activity. The Journal of Poultry Science 53: 257–263, 2016.
   

• Ishishita S, Kinoshita K, Nakano M, Matsuda Y. Embryonic development and inviability phenotype of chicken-Japanese quail F1 hybrids. Scientific Reports 6:26369, 2016.
   

• Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Sakakura YA. Genetic map for the only self-fertilizing vertebrate. G3: Genes, Genomes, Genetics 6:1095–1106, 2016.
   

• Sujiwattanarat P, Pongsanarakul P, Temsiripong Y, Temsiripong, T, Thawornkuno C, Uno Y, Unajak S, Matsuda Y, Choowongkomon K, Srikulnath K. Molecular cloning and characterization of Siamese crocodile (Crocodylus siamensis) copper, zinc superoxide dismutase (CSI-Cu,Zn-SOD) gene. Comparative Biochemistry and Physiology191: 187–195, 2016.
   

• Matsubara K, O’Meally D, Azad B, Georges A, Sarre SD, Graves JAM, Matsuda Y, Ezaz T.  Amplification of microsatellite repeat motifs is associated with the evolutionary differentiation and heterochromatinization of sex chromosomes in Sauropsida. Chromosoma 125: 111–123, 2016.

 

【2015】

• Matsubara K, Uno Y, Srikulnath K, Matsuda Y, Miller E, Olsson M. No interstitial telomeres on autosomes but remarkable amplification of telomeric repeats on the W sex chromosome in the sand lizard (Lacerta agilis). Journal of Heredity  106: 753–757, 2016.
   

• Srikulnath K, Uno Y, Nishida C, Ota H, Matsuda Y. Karyotype reorganization in the Hokou gecko (Gekko hokouensis, Gekkonidae): the process of microchromosome disappearance in Gekkota. PLoS ONE 10: e0134829, 2015.
   

• Nakamura Y, Iwasaki T, Umei Y, Saotome K, Nakajima Y, Kitahara S, Uno Y, Matsuda Y, Oike A, Kodama M, Nakamura M. Molecular cloning and characterization of oocyte-specific Pat1a in Rana rugosafrogs. Journal of Experimental Zoology A. Ecological Genetics and Physiology 323: 516–526, 2015.
   

• Matsubara K, Uno Y, Srikulnath K, Seki R, Nishida C, Matsuda Y. Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and Burmese python (Python bivittatus, Pythonidae). Chromosoma 124: 529–539, 2015.
   

• Ishishita S, Tsuboi K, Ohishi N, Tsuchiya K, Matsuda Y. Abnormal pairing of X and Y sex chromosomes during meiosis I in interspecific hybrids of Phodopus campbelli and P. sungorus. Scientific Reports 5: 9435, 2015.
   

• Kodama M, Suda M, Sakamoto D, Iwasaki T, Matsuo Y, Uno Y, Matsuda Y, Nakamura Y, Katsu Y, Nakamura M. Molecular cloning and characterization of anti-Müllerian hormone (AMH) from the Japanese wrinkled frog, Rana rugosa. Endocrinology156(5): 1914–1923, 2015.
   

• Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M. A new nomenclature of Xenopus laevis chromosomes based on the phylogenetic relationship to Silurana/Xenopus tropicalis. Cytogenetic and Genome Research 145: 187–191, 2015. (invited article in the special issue “Evolution, Genetics, and Genomics of Xenopus”).
   

• Uno Y, Nishida C, Takagi C, Igawa T, Ueno N, Sumida M, Matsuda Y. Extraordinary diversity in the origins of sex chromosomes in anurans inferred from comparative gene mapping. Cytogenetic and Genome Research 145:218–229, 2015. (invited article in the special issue “Evolution, Genetics, and Genomics of Xenopus”).
   

• Hikosaka A, Uno Y, Matsuda Y. Distribution of the T2-MITE family transposons in the Xenopus (Silurana) tropicalis genome. Cytogenetic and Genome Research 145: 230–242, 2015. (invited article in the special issue “Evolution, Genetics, and Genomics of Xenopus”).
   

• Shibuya K, Kinoshita K, Mizutani M, Oshima A, Yamashita R, Matsuda Y. Intraocular ossification in the GSP/pe chicken with imperfect albinism. Veterinary Pathology 52: 688–691, 2015.
   

• Morishita Y, Kuroiwa A, Suzuki T. Quantitative analysis of tissue deformation dynamics reveals three characteristic growth modes and globally aligned anisotropic tissue deformation during chick limb development. Development., pii: dev.109728. 2015
  
   

【2014】

• Romanov MN, Farre M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Niclas Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, Griffin DK. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics 15: 1060, 2015.
   

• Tadano R, Nunome M, Mizutani M, Kawahara-Miki R, Fujiwara A, Takahashi S, Kawashima T, Nirasawa K, Ono T, Kono T, Matsuda Y. Cost-effective development of highly polymorphic microsatellite in Japanese quail facilitated by next-generation sequencing. Animal Genetics 45: 881–884, 2014.
   

• Ishishita S, Matsuda Y, Kitada K. Genetic evidence suggests that Spata22 is required for the maintenance of Rad51 foci in mammalian meiosis. Scientific Reports 4: 6148, 2014.
   

• Kawagoshi T, Uno Y, Nishida C, Matsuda Y. The Staurotypus turtles and Aves have the same origin of sex chromosomes but evolved different types of XY and ZW heterogametic sex determination. PLoS One 9 (8): e105315, 2014.
   

• Matsubara K. Gamble T, Matsuda Y, Zarkower D, Sarre SD, Georges A, Graves JAM, Ezaz T. Non-homologous sex chromosomes in two geckos (Gekkonidae: Gekkota) with female heterogamety. Cytogenet Genome Res 143: 251–258, 2014.
   

• Srikulnath K, Matsubara K, Uno Y, Nishida C, Olsson M, Matsuda Y. Identification of the linkage group of the Z sex chromosomes of the sand lizard (Lacerta agilis, Lacertidae) and elucidation of karyotype evolution in lacertid lizards. Chromosoma 123: 563–575, 2014.
   

• Matsubara KD, Sarre SD, Georges A, Matsuda Y, Graves JAM, Ezaz T. Highly differentiated ZW sex microchromosomes in the Australian Varanus species evolved through rapid amplification of repetitive sequences. PLoS ONE 9: e95226, 2014.
   

• Ishijima J*, Uno Y*, Nishida C, Matsuda Y. Genomic structures of the kW1 loci on the Z and W chromosomes in ratite birds: structural changes at an early stage of W chromosome differentiation. Cytogenetic and Genome Research 142: 255–267, 2014. (*co-first authors)
   

• Nunome M, Kinoshita G, Tomozawa M, Torii H, Matsuki R, Yamada F, Matsuda Y, Suzuki H. Lack of association between winter coat colour and genetic population structure in the Japanese hare, Lepus brachyurus (Lagomorpha: Leporidae). Biological Journal of the Linnean Society 111: 761–776, 2014.
   

• Ishishita S, Tsuruta Y, Uno Y, Nakamura A, Nishida C, Griffin DK, Tsudzuki M, Ono T, Matsuda Y. Chromosome size-correlated and chromosome size-uncorrelated homogenization of centromeric repetitive sequences in New World quails. Chromosome Research 22: 15-34, 2014. (invited article in the special issue “Avian Genomics”).

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• Nishida C, Ishishita S, Yamada K, Griffin DK, Matsuda Y. Dynamic chromosomal reorganization in the osprey (Pandion haliaetus, Pandionidae, Falconiformes): the relationship between chromosome size and chromosomal distribution of centromeric repetitive DNA sequences. Cytogenetic and Genome Research 142(3):179-189, 2014.
   

• Mizuno S, Dinh T, Mizobuchi A, Iseki H, Mizuno-Iijima S, Kim J-D, Ishida J, Matsuda Y, Kunita S, Fukamizu A, Yagami K, Sugiyama F. Truncated Cables1 causes agenesis of the corpus callosum in mice. Laboratory Investigation 94: 321–330, 2014.  
   

• Kuroiwa A, Terai Y, Kobayashi N, Yoshida K, Suzuki M, Nakanishi A, Matsuda Y, Watanabe M, Okada N. Construction of chromosome markers from the Lake Victoria cichlid Paralabidochromis chilotes and their application to comparative mapping. Cytogenetic and Genome Research 142:112–120, 2014. 
   

• Kinoshita K, Akiyama T, Mizutani M, Shinomiya A, Ishikawa A, Younis HH, Tsudzuki M, Namikawa T, Matsuda Y. Endothelin receptor B2 (EDNRB2) is Responsible for the Tyrosinase-independent Recessive White (mow) and Mottled (mo) Plumage Phenotypes in Chicken. PLoS ONE 9: e86361, 2014.
   

• IsIslam FB, Uno Y, Nunome M, Nishimura O, Tarui H, Agata K, Matsuda Y. Comparison of the chromosome structures between the chicken and three anserid species, the domestic duck (Anas platyrhynchos), Muscovy duck (Cairina moschata), and Chinese goose (Anser cygnoides), and the delineation of their karyotype evolution by comparative chromosome mapping. Journal of Poultry Science 51: 1–13, 2014.
   

• Matsubara Y, Sakai A, Kuroiwa A, Suzuki T. Efficient embryonic culture method for the Japanese striped snake, Elaphe quadrivirgata, and its early developmental stage. Developmental, Growth & Differentiation., 56, 573-582. 2014
   

• Morishita Y. and Suzuki T. Bayesian inference of whole-organ deformation dynamics from limited space-time point data. J Theor Biol., 357, 74-85. 2014.
   

• Huynen L, Suzuki T, Ogura T, Watanabe Y, Millar CD, Hofreiter M, Smith C, Mirmoeini S, Lambert DM. Reconstruction and in vivo analysis of the extinct tbx5 gene from ancient wingless moa (Aves: Dinornithiformes). BMC Evol Biol/Biomed Central., 14, doi:10.1186. 2014.
   

【2013】

• Srikulnath K, Uno Y, Nishida C, Matsuda Y. Karyotype evolution in monitor lizards: cross-species chromosome mapping of cDNA reveals highly conserved synteny and gene order in the Toxicofera clade. Chromosome Research 21: 805‒819, 2013.
   

• Chaiprasertsri N, Uno Y, Peyachoknagul S, Prakhongcheep O, Baicharoen S, Charernsuk S, Nishida C, Matsuda Y, Koga A, Srikulnath K. Highly species-specific centromeric repetitive DNA sequences in lizards: molecular cytogenetic characterization of a novel family of satellite DNA sequences isolated from the water monitor lizard (Varanus salvator macromaculatus, Platynota). Journal of Heredity104: 798–806, 2013.
   

• Uno Y, Asada Y, Nishida C, Takehana Y, Sakaizumi M, Matsuda Y. Divergence of Repetitive DNA Sequences in the Heterochromatin of Medaka Fishes: Molecular Cytogenetic Characterization of Constitutive Heterochromatin in Two Medaka species: Oryzias hubbsi and O. celebensis (Adrianichthyidae, Beloniformes). Cytogenetic and Genome Research 141: 212‒226, 2013.(invited article in the special issue “Molecular Cytogenetics of Fishes”)
   

• Uno Y, Nishida C, Takagi C, Ueno N, Matsuda Y. Homoeologous chromosomes of Xenopus laevis are highly conserved after whole genome duplication. Heredity 111: 430‒436, 2013.
   

• Nishida C, Ishijima J, Ishishita S, Yamada K, Yamazaki T, Matsuda Y. Chromosome reshuffling and genomic compartmentalization of microchromosomes in Japanese mountain hawk-eagle (Nisaetus nipalensis orientalis, Accipitridae, Falconiformes, Aves). Cytogenetic and Genome Research 141: 284‒294, 2013.
   

• Ishishita S, Inui T, Matsuda Y, Serikawa T, Kitada K. Infertility associated with meiotic failure in the tremor rat (tm/tm) is caused by the deletion of spermatogenesis associated 22. Experimental Animals 62: 219–227, 2013.
   

• Islam FB, Ishishita S, Uno Y, Mollah MBR, Srikulnath K, Matsuda Y. Male hybrid sterility in the mule duck is associated with meiotic arrest of primary spermatocytes. Journal of Poultry Science 50: 311–320, 2013.
   

• Iizuka K, Matsuda Y, Yamada T, Nakazato T, Sessions SK. Chromosomal localization of the 18S and 28S ribosomal RNA genes using FISH and AgNO3 banding in Hynobius quelpaertensis, H. tsuensis and Onychodactylus koreanus (Urodela: Hynobiidae). Current Herpetology 32: 89–101, 2013.
   

• Kawahara-Miki R, Sano S, Nunome M, Shimmura T, Kuwayama T, Takahashi S, Kawashima T, Matsuda Y, Yoshimura T, Kono T. Next-generation sequencing reveals genomic features in the Japanese quail. Genomics101: 345–353, 2013.
   

• Suzuki T. How is digit identity determined during chick development? Dev Growth Differ., 55, 130-138 (2013)